PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00171.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family AP2
Protein Properties Length: 482aa    MW: 53557.7 Da    PI: 6.9301
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00171.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-17157206155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Migut.L00171.1.p 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 206
                       78*******************......55************************997 PP

2AP240.76e-13249299155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+ +++a+ k +g
  Migut.L00171.1.p 249 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARSYDKAAIKCNG 299
                       89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-9157206IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-15157215IPR016177DNA-binding domain
SMARTSM003804.7E-32158220IPR001471AP2/ERF domain
PROSITE profilePS5103217.622158214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-17158214IPR001471AP2/ERF domain
CDDcd000181.28E-10158213No hitNo description
CDDcd000184.80E-23249309No hitNo description
PfamPF008479.9E-9249299IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-16249308IPR016177DNA-binding domain
SMARTSM003808.9E-30250313IPR001471AP2/ERF domain
PROSITE profilePS5103215.158250307IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-15250307IPR001471AP2/ERF domain
PRINTSPR003672.5E-5251262IPR001471AP2/ERF domain
PRINTSPR003672.5E-5289309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MWDLNGSPDR RKDDESEGYS DEKGKRVGSA SNSSSSAVVV EDGSDDEEDL EKIGGRKRSS  60
RIFGFSVHDG GDDDDDRAPG LSPVTHQFFP VEGPEMAGGG GGPADFPRAH WVGVKFCQSS  120
EPLGGGASSV AGKSSAAAAE VGQPLKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK  180
QVYLGGFDTA HAAARAYDRA AIKFRGVEAD INFTLEDYED DLKQMGNLTK EEFVHVLRRQ  240
STGFPRGSSK YRGVTLHKCG RWEARMGQFL GKKYVYLGLF DTEIEAARSY DKAAIKCNGK  300
EAVTNFDPTI YEDELKAAES SNNNATDDHN LDLSLGNSAS PQINETGFNR DHNSFSTQFE  360
SDWRRHGLRP EQNLIKNPER KDGYMETETL QLLSQAQIHS PVQQRFGQLN RPFVGSQIYQ  420
VQQQQQQQQQ QWQMNHNRQN QGHQLFASAA ASSGFQQGAS QTITPQNWLH KNGIHPLIRP  480
S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840811.10.0PREDICTED: floral homeotic protein APETALA 2
SwissprotP479271e-143AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A022R2X20.0A0A022R2X2_ERYGU; Uncharacterized protein
STRINGVIT_07s0031g00220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-120AP2 family protein